massxpert stable port information

Info2: <<
Package: massxpert-%type_pkg[qt]
Version: 2.3.6
Revision: 1004
Type: qt (x11 mac)

Source: http://download.tuxfamily.org/massxpert/source/massxpert-%v.tar.gz
Source-MD5: e51cf36f01e78cf07a71e33a8e0f8ad7
Source2: http://massxpert.org/userman/pdf/massxpert.pdf
Source2-MD5: 1e7bdc9fbf9a1b1e23df48c0590f13dc

Depends: <<
qt4-base-%type_pkg[qt]-qtcore-shlibs (>= 4.7.3-1),
qt4-base-%type_pkg[qt]-qtgui-shlibs (>= 4.7.3-1),
qt4-base-%type_pkg[qt]-qtsvg-shlibs (>= 4.7.3-1),
qt4-base-%type_pkg[qt]-qtxml-shlibs (>= 4.7.3-1),
(%type_pkg[qt] = x11) x11-shlibs
<<
BuildDepends: <<
cmake,
fink (>= 0.29.7-1),
qt4-base-%type_pkg[qt] (>= 4.7.3-1),
(%type_pkg[qt] = x11) x11-dev
<<

Conflicts: massxpert-mac, massxpert-x11
Replaces: massxpert-mac, massxpert-x11

PatchFile: massxpert.patch
PatchFile-MD5: 0627d543ebf79719269280437571e4cf

Maintainer: None
Homepage: http://www.massxpert.org
License: GPL
# GPL v3, actually

Description: Mass spectrometric package, uses Qt4

GCC: 4.0
#SetLDFLAGS: -Wl,-framework,CoreFoundation

CompileScript: <<
#!/bin/sh -ev
export PATH=%p/lib/qt4-%type_pkg[qt]/bin:$PATH
%p/bin/cmake \
--debug-output -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DCMAKE_INSTALL_PREFIX:PATH=%p \
-DCMAKE_INCLUDE_PATH:PATH=%p/include \
-DCMAKE_LIBRARY_PATH:PATH=%p/lib \
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" \
-DCMAKE_OSX_SYSROOT:PATH="/" \
.

# patch three link.txt files after cmake to create a bundle instead of dynamic libraries
perl -pi -e "s,dynamiclib,bundle,g" plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/link.txt
perl -pi -e "s,dynamiclib,bundle,g" plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/link.txt
perl -pi -e "s,dynamiclib,bundle,g" plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/link.txt

make
<<

AppBundles: gui/massXpert.app
DocFiles: COPYING TODO ../massxpert.pdf

DescDetail: <<
The massXpert project aims at providing (bio)chemists with
a software package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each
monomer and monomer chemical modification;
* Polymer sequence chemical/enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Simulation of isotopic patterns for any chemical formula.
<<
DescPackaging: <<
Previous maintainer: Jack Fink
Koen van der Drift
<<

<<

massxpert stable port .patch

diff -Nurd massxpert-2.3.5/gui/CMakeLists.txt massxpert-2.3.5-patched/gui/CMakeLists.txt
--- massxpert-2.3.5/gui/CMakeLists.txt 2010-04-29 08:21:07.000000000 -0400
+++ massxpert-2.3.5-patched/gui/CMakeLists.txt 2010-05-09 19:32:47.000000000 -0400
@@ -233,19 +233,19 @@
EXEC_PROGRAM ("cp ${CMAKE_CURRENT_SOURCE_DIR}/images/massXpert.icns ${CMAKE_CURRENT_BINARY_DIR}/massXpert.app/Contents/Resources")

# We want to build universal binaries
-SET (CMAKE_OSX_ARCHITECTURES "ppc;i386"
- CACHE STRING "Build architectures for OSX" FORCE)
+#SET (CMAKE_OSX_ARCHITECTURES "ppc;i386"
+# CACHE STRING "Build architectures for OSX" FORCE)

# That can be deployed on older system
# (Qt 4.4.0 is available starting at 10.3.9)
-SET (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -mmacosx-version-min=10.3"
+SET (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -mmacosx-version-min=10.4"
CACHE STRING "Flags used by the compiler during all build types." FORCE)

SET (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fvisibility-inlines-hidden"
CACHE STRING "Flags used by the compiler during all build types." FORCE)

-SET (CMAKE_OSX_SYSROOT "/Developer/SDKs/MacOSX10.4u.sdk"
- CACHE STRING "MacOSX10.4u.sdk." FORCE)
+#SET (CMAKE_OSX_SYSROOT "/Developer/SDKs/MacOSX10.4u.sdk"
+# CACHE STRING "MacOSX10.4u.sdk." FORCE)

SET_SOURCE_FILES_PROPERTIES (application.qrc ${TARGET}_fr.qm
PROPERTIES MACOSX_BUNDLE_LOCATION Resources)

massxpert _unstable_ port .patch