sextractor stable port information

Package: sextractor
Version: 2.8.6
Revision: 4
Description: Catalogue of objects from astronomical images
License: OSI-Approved
Homepage: http://astromatic.iap.fr/software/sextractor
Maintainer: Monic Polynomial

Source: ftp://ftp.iap.fr/pub/from_users/bertin/%n/%n-%v.tar.gz
Source-MD5: 6c2fc529cd89bdd11b1fbafc0866131c

PatchFile: %n.patch
PatchFile-MD5: 524315877c6a9b28a1634ab35ad28ff4

BuildDepends: <<
autoconf2.6,
automake1.11,
fink (>= 0.24.12),
fink-package-precedence,
fftw3,
libtool2,
pkgconfig
<<

Depends: <<
fftw3-shlibs
<<

SetCFLAGS: -Os

ConfigureParams: --prefix=%p --with-fftw-incdir=%p/include --with-fftw=%p/lib --mandir=%p/share/man --enable-dependency-tracking

CompileScript: <<
#!/bin/sh -ev
autoreconf -fi
libtoolize -fi
%{default_script}
fink-package-precedence .
<<
InfoTest: <<
TestScript: make check || exit 2
<<
InstallScript: <<
#!/bin/sh -ev
make install DESTDIR=%d
mkdir -p %i/share/%n
cp -p config/* %i/share/%n
<<

DocFiles: AUTHORS BUGS COPYRIGHT ChangeLog HISTORY README THANKS

DescDetail: <<
SExtractor is a program that builds a catalogue of objects from an astronomical
image. Although it is particularly oriented towards reduction of large scale
galaxy-survey data, it can perform reasonably well on moderately crowded star
fields.
<<
DescUsage: <<
sex IMAGE.FITS -c {configuration_file}

The configuration and paramater files must be in the same directory as the
image being analyzed.
<<
DescPackaging: <<
Copy the included configuration and parameter files to $DATADIR so that a default
set is available.
<<

sextractor stable port .patch

diff -Nurd sextractor-2.8.6.ori/acx_atlas.m4 sextractor-2.8.6/acx_atlas.m4
--- sextractor-2.8.6.ori/acx_atlas.m4 2009-01-29 11:52:02.000000000 -0200
+++ sextractor-2.8.6/acx_atlas.m4 2009-10-23 02:46:04.000000000 -0200
@@ -19,200 +19,23 @@
dnl Search include files
dnl --------------------

+
acx_atlas_ok=no
-if test x$2 = x; then
- if test x$1 = x; then
- AC_CHECK_HEADERS([cblas.h clapack.h],[acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE(ATLAS_BLAS_H, "cblas.h", [BLAS header filename.])
- AC_DEFINE(ATLAS_LAPACK_H, "clapack.h", [CLAPACK header filename.])
- else
- AC_CHECK_HEADERS([atlas/cblas.h atlas/clapack.h],[acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE(ATLAS_BLAS_H, "atlas/cblas.h", [BLAS header filename.])
- AC_DEFINE(ATLAS_LAPACK_H, "atlas/clapack.h", [CLAPACK header filename.])
- else
- atlas_def=/usr/local/atlas
- AC_CHECK_HEADERS(
- [$atlas_def/include/cblas.h $atlas_def/include/clapack.h],
- [acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE_UNQUOTED(ATLAS_BLAS_H, "$atlas_def/include/cblas.h",
- [BLAS header filename.])
- AC_DEFINE_UNQUOTED(ATLAS_LAPACK_H, "$atlas_def/include/clapack.h",
- [CLAPACK header filename.])
- else
- atlas_def=/usr/atlas
- AC_CHECK_HEADERS(
- [$atlas_def/include/cblas.h $atlas_def/include/clapack.h],
- [acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE_UNQUOTED(ATLAS_BLAS_H, "$atlas_def/include/cblas.h",
- [BLAS header filename.])
- AC_DEFINE_UNQUOTED(ATLAS_LAPACK_H, "$atlas_def/include/clapack.h",
- [CLAPACK header filename.])
- else
- ATLAS_ERROR="CBLAS/LAPack include files not found!"
- fi
- fi
- fi
- fi
- else
- AC_CHECK_HEADERS([$1/include/cblas.h $1/include/clapack.h],
- [acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE_UNQUOTED(ATLAS_BLAS_H, "$1/include/cblas.h",
- [BLAS header filename.])
- AC_DEFINE_UNQUOTED(ATLAS_LAPACK_H, "$1/include/clapack.h",
- [CLAPACK header filename.])
- else
- AC_CHECK_HEADERS([cblas.h clapack.h],[acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE_UNQUOTED(ATLAS_BLAS_H, "cblas.h",
- [BLAS header filename.])
- AC_DEFINE_UNQUOTED(ATLAS_LAPACK_H, "clapack.h",
- [CLAPACK header filename.])
- else
- ATLAS_ERROR="CBLAS/LAPack include files not found in $1/include!"
- fi
- fi
- fi
+AC_CHECK_HEADERS([Accelerate/Accelerate.h],[acx_atlas_ok=yes])
+if test acx_atlas_ok = yes; then
+ AC_DEFINE(ATLAS_BLAS_H, "Accelerate/Accelerate.h", [BLAS header filename.])
+ AC_DEFINE(ATLAS_LAPACK_H, "Accelerate/Accelerate.h", [CLAPACK header filename.])
+ LIBS="$LIBS -framework vecLib"
else
- AC_CHECK_HEADERS([$2/cblas.h $2/clapack.h], [acx_atlas_ok=yes])
- if test x$acx_atlas_ok = xyes; then
- AC_DEFINE_UNQUOTED(ATLAS_BLAS_H, "$2/cblas.h",
- [BLAS header filename.])
- AC_DEFINE_UNQUOTED(ATLAS_LAPACK_H, "$2/clapack.h",
- [CLAPACK header filename.])
- else
- ATLAS_ERROR="CBLAS/LAPack include files not found in $2!"
- fi
-fi
-
-dnl --------------------
-dnl Search library files
-dnl --------------------
-
-if test x$acx_atlas_ok = xyes; then
- OLIBS="$LIBS"
- LIBS=""
- if test x$1 = x; then
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH=""
- else
- atlas_def=/usr/local/atlas
- unset ac_cv_lib_lapack_clapack_dpotrf
- unset ac_cv_lib_cblas_cblas_dgemm
- acx_atlas_ok=yes
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-L$atlas_def/lib -lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-L$atlas_def/lib -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH="-L$atlas_def/lib"
- else
- atlas_def=/usr/lib64/atlas
- unset ac_cv_lib_lapack_clapack_dpotrf
- unset ac_cv_lib_cblas_cblas_dgemm
- acx_atlas_ok=yes
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-L$atlas_def -lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-L$atlas_def -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH="-L$atlas_def"
- else
- atlas_def=/usr/lib/atlas
- unset ac_cv_lib_lapack_clapack_dpotrf
- unset ac_cv_lib_cblas_cblas_dgemm
- acx_atlas_ok=yes
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-L$atlas_def -lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-L$atlas_def -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH="-L$atlas_def"
- else
- atlas_def=/usr/atlas
- unset ac_cv_lib_lapack_clapack_dpotrf
- unset ac_cv_lib_cblas_cblas_dgemm
- acx_atlas_ok=yes
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-L$atlas_def/lib -lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-L$atlas_def/lib -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH="-L$atlas_def/lib"
- else
- ATLAS_ERROR="CBLAS/LAPack library files not found at usual locations!"
- fi
- fi
- fi
- fi
- fi
- else
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-L$1 -lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-L$1 -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH="-L$1"
- else
- unset ac_cv_lib_lapack_clapack_dpotrf
- unset ac_cv_lib_cblas_cblas_dgemm
- acx_atlas_ok=yes
- AC_CHECK_LIB(lapack, [clapack_dpotrf],, [acx_atlas_ok=no],
- [-L$1/lib -lcblas -latlas -lm])
- AC_CHECK_LIB(cblas, cblas_dgemm,, [acx_atlas_ok=no],
- [-L$1/lib -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIBPATH="-L$1/lib"
- else
- ATLAS_ERROR="CBLAS/LAPack library files not found in $1!"
- fi
- fi
- fi
- LIBS="$OLIBS"
+ ATLAS_ERROR="Accelerate/Accelerate.h not found!"
+ AC_SUBST(ATLAS_ERROR)
fi

AC_SUBST(ATLAS_LIBPATH)
AC_SUBST(ATLAS_CFLAGS)
-
-dnl -------------------------------------------------------------------------
-dnl Finally, check MP version and execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND
-dnl -------------------------------------------------------------------------
-if test x"$acx_atlas_ok" = xyes; then
- AC_DEFINE(HAVE_ATLAS,1,
- [Define if you have the ATLAS libraries and header files.])
- if test x$3 = xyes; then
-dnl Check whether the multithreaded version of ATLAS is there too:
- AC_CHECK_LIB(ptcblas, cblas_dgemm,, [acx_atlas_ok=no],
- [$ATLAS_LIBPATH -lcblas -latlas -lm])
- if test x$acx_atlas_ok = xyes; then
- ATLAS_LIB="$ATLAS_LIBPATH -llapack -lptcblas -lcblas -latlas"
- LIBS="$OLIBS"
- AC_SUBST(ATLAS_LIB)
- AC_DEFINE(HAVE_ATLAS_MP,1,
- [Define if you have the parallel ATLAS libraries.])
- $4
- else
- ATLAS_ERROR="CBLAS/LAPack was compiled without multithreading support!"
- AC_SUBST(ATLAS_ERROR)
- $5
- fi
- else
- ATLAS_LIB="$ATLAS_LIBPATH -llapack -lcblas -latlas"
- LIBS="$OLIBS"
- AC_SUBST(ATLAS_LIB)
- $4
- fi
-else
- AC_SUBST(ATLAS_ERROR)
- $5
-fi
+ATLAS_LIB="-framework vecLib"
+AC_SUBST(ATLAS_LIB)
+AC_DEFINE(HAVE_ATLAS_MP,1,[Define if you have the parallel ATLAS libraries.])
+$4

])dnl ACX_ATLAS
diff -Nurd sextractor-2.8.6.ori/acx_fftw.m4 sextractor-2.8.6/acx_fftw.m4
--- sextractor-2.8.6.ori/acx_fftw.m4 2009-01-29 11:52:02.000000000 -0200
+++ sextractor-2.8.6/acx_fftw.m4 2009-10-21 17:22:59.000000000 -0200
@@ -49,7 +49,7 @@
else
AC_CHECK_HEADER($2/fftw3.h,[acx_fftw_ok=yes])
if test x$acx_fftw_ok = xyes; then
- AC_DEFINE(FFTW_H, "$2/fftw3.h", [FFTW header filename.])
+ AC_DEFINE_UNQUOTED(FFTW_H, "$2/fftw3.h", [FFTW header filename.])
else
FFTW_ERROR="FFTW include files not found in $2!"
fi
diff -Nurd sextractor-2.8.6.ori/src/fft.c sextractor-2.8.6/src/fft.c
--- sextractor-2.8.6.ori/src/fft.c 2009-01-29 11:52:00.000000000 -0200
+++ sextractor-2.8.6/src/fft.c 2009-10-23 02:50:02.000000000 -0200
@@ -22,7 +22,7 @@
#include
#include

-#include
+#include FFTW_H

#include "define.h"
#include "globals.h"
diff -Nurd sextractor-2.8.6.ori/src/levmar/lm.h sextractor-2.8.6/src/levmar/lm.h
--- sextractor-2.8.6.ori/src/levmar/lm.h 2009-01-29 11:51:58.000000000 -0200
+++ sextractor-2.8.6/src/levmar/lm.h 2009-10-23 01:36:57.000000000 -0200
@@ -27,7 +27,6 @@

/* specify whether to use LAPACK or not. The first option is strongly recommended */
#define HAVE_LAPACK /* use LAPACK */
-#undef HAVE_LAPACK /* uncomment this to force not using LAPACK */

/* to avoid the overhead of repeated mallocs(), routines in Axb.c can be instructed to
* retain working memory between calls. Such a choice, however, renders these routines
@@ -42,7 +41,6 @@
* both the single and double precision routines
*/
#define LM_DBL_PREC /* comment this if you don't want the double precision routines to be compiled */
-#define LM_SNGL_PREC /* comment this if you don't want the single precision routines to be compiled */

/****************** End of configuration options, no changes necessary beyond this point ******************/

diff -Nurd sextractor-2.8.6.ori/src/pattern.c sextractor-2.8.6/src/pattern.c
--- sextractor-2.8.6.ori/src/pattern.c 2009-03-18 07:59:57.000000000 -0300
+++ sextractor-2.8.6/src/pattern.c 2009-10-23 03:02:10.000000000 -0200
@@ -28,7 +28,8 @@
#include
#include
#include
-#include ATLAS_LAPACK_H
+
+#include

#include "define.h"
#include "globals.h"
@@ -132,6 +133,107 @@
return;
}

+/* The Accelerate framework hasn't got clapack_dpotrf or clapack_dpotrs, so we borrow these functions from ATLAS. A bit of licence information, first */
+
+/*
+ * Automatically Tuned Linear Algebra Software v3.6.0
+ * (C) Copyright 1999 R. Clint Whaley
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ * notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ * notice, this list of conditions, and the following disclaimer in the
+ * documentation and/or other materials provided with the distribution.
+ * 3. The name of the ATLAS group or the names of its contributers may
+ * not be used to endorse or promote products derived from this
+ * software without specific written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ * ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
+ * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ * PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE ATLAS GROUP OR ITS CONTRIBUTORS
+ * BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ *
+ */
+
+int clapack_dpotrf(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+ const int N, double *A, const int LDA)
+{
+ char uplo = 'U';
+ int info = 0;
+ if (Order==CblasRowMajor)
+ {//A is symmetric, we switch Uplo to get result for CblasRowMajor
+ if (Uplo==CblasUpper)
+ uplo='L';
+ }
+ else
+ if (Uplo==CblasLower)
+ uplo='L';
+ dpotrf(uplo, N, A, LDA, &info);
+ int n=N;
+ int lda=LDA;
+ dpotrf(&uplo, &n, A, &lda, &info);
+ return info;
+}
+
+int clapack_dpotrs(const enum CBLAS_ORDER Order, const enum CBLAS_UPLO Uplo,
+ const int N, const int NRHS, const double *A, const int lda,
+ double *B, const int ldb)
+{
+ int ierr=0;
+ if (Order != CblasRowMajor && Order != CblasColMajor)
+ {
+ ierr = -1;
+ cblas_xerbla(1, "clapack_dpotrs",
+ "Order must be %d or %d, but is set to %d\n",
+ CblasRowMajor, CblasColMajor, Order);
+ }
+ if (Uplo != CblasUpper && Uplo != CblasLower)
+ {
+ ierr = -2;
+ cblas_xerbla(2, "clapack_dpotrs",
+ "Uplo must be %d or %d, but is set to %d\n",
+ CblasUpper, CblasLower, Uplo);
+ }
+ if (N < 0)
+ {
+ ierr = -3;
+ cblas_xerbla(3, "clapack_dpotrs",
+ "N cannot be less than zero 0,; is set to %d.\n", N);
+ }
+ if (NRHS < 0)
+ {
+ ierr = -4;
+ cblas_xerbla(4, "clapack_dgetrs",
+ "NRHS cannot be less than zero 0,; is set to %d.\n", NRHS);
+ }
+ if (lda < N || lda < 1)
+ {
+ ierr = -6;
+ cblas_xerbla(6, "clapack_dpotrs",
+ "lda must be >= MAX(N,1): lda=%d N=%d\n", lda, N);
+ }
+ if (ldb < N || ldb < 1)
+ {
+ ierr = -8;
+ cblas_xerbla(8, "clapack_dpotrs",
+ "ldb must be >= MAX(N,1): ldb=%d N=%d\n", ldb, N);
+ }
+ if (!ierr) dpotrs(Order, Uplo, N, NRHS, A, lda, B, ldb);
+ return(ierr);
+}
+
+/* End of functions borrowed from ATLAS. Thanks! */
+

/****** pattern_fit ******************************************************
PROTO void pattern_resample(patternstruct *pattern)

sextractor _unstable_ port .patch